Introduction | AIRR Data Standards | Reading AIRR formatted files | Reading Rearrangements | Reading AIRR Data Models | Writing AIRR formatted files | Writing Rearrangements | Writing AIRR Data Models | Validating AIRR data structures | References

Conducting a Genotype Analysis with ogrdbstats | Package Installation | Using The Package from the Command Line | Detailed Description of Input Files | REF_FILE - FASTA file containing the IMGT gap-aligned reference germline sequences. | READ_FILE - A tab-separated file containing the annotated reads used to infer the genotype, in MiAIRR, CHANGEO or IgDiscover format. | INF_FILE - FASTA file containing the inferred novel alleles | Output | Plots | Haplotyping | Example | Usage Notes | Usage Notes - TIgGER | Usage Notes - IgDiscover | Usage Notes - partis | Usage Notes - IMPre | ogrdbstats API | Creating reports programmatically | Customising and Extending the Reports | Acknowledgements