Package: ogrdbstats
Type: Package
Title: Analysis of Adaptive Immune Receptor Repertoire Germ Line
        Statistics
Version: 0.5.5
Authors@R: person(
  "William", "Lees",
  email = "william@lees.org.uk",
  role = c("aut", "cre"),
  comment = c(ORCID = "0000-0001-9834-6840"))
URL: https://github.com/airr-community/ogrdbstats
BugReports: https://github.com/airr-community/ogrdbstats/issues
Description: Multiple tools are now available for inferring the
        personalised germ line set from an adaptive immune receptor
        repertoire. Output from these tools is converted to a single
        format and supplemented with rich data such as usage and
        characterisation of 'novel' germ line alleles. This data can be
        particularly useful when considering the validity of novel
        inferences. Use of the analysis provided is described in
        <doi:10.3389/fimmu.2019.00435>.
License: CC BY-SA 4.0
Encoding: UTF-8
Depends: R (>= 4.4)
biocViews:
Imports: dplyr (>= 0.8.3), ggplot2 (>= 3.2.1), magrittr, tigger (>=
        0.4.0), alakazam (>= 0.3.0), stringr (>= 1.4.0), data.table,
        gridExtra (>= 2.3), tidyr (>= 1.0.0), stringdist (>= 0.9.5.2),
        RColorBrewer (>= 1.1-2), pwalign (>= 1.0.0), argparser (>=
        0.4), ComplexHeatmap, bookdown, scales,
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.3
LazyData: true
Additional_repositories: https://bioconductor.org/packages/release/bioc
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev perl libx11-dev
        xz-utils zlib1g-dev
Repository: https://airr-community.r-universe.dev
Date/Publication: 2026-03-23 09:42:00 UTC
RemoteUrl: https://github.com/airr-community/ogrdbstats
RemoteRef: HEAD
RemoteSha: f224364632dde1afc5dc222be2208f06e68a523d
NeedsCompilation: no
Packaged: 2026-06-21 08:41:30 UTC; root
Author: William Lees [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-9834-6840>)
Maintainer: William Lees <william@lees.org.uk>